Network epidemiology

modeling spread of disease and risky behaviors through populations

This work focuses on modeling disease spread, contagion and diffusion processes across social and technical spaces in living systems. The goal is to develop mechanistically realistic predictive models of human disease and mobility at the meta-population level. Models are used to forecast spreading of infectious agents to determine risk threat such as thresholds of disease, containment strategies, and effectiveness of targeted interventions. Results from these projects are reported to the WHO and CDC who use our recommendations to set protocols and policies.

Featured publications

Pandemic monitoring with global aircraft-based wastewater surveillance networks

Guillaume St-Onge, Jessica T. Davis, Laurent Hébert-Dufresne, Antoine Allard, Alessandra Urbinati, Samuel V. Scarpino, Matteo Chinazzi & Alessandro Vespignani
Nature Medicine
February 12, 2025

Bias in mobility datasets drives divergence in modeled outbreak dynamics

Taylor Chin, Michael A. Johansson, Anir Chowdhury, Shayan Chowdhury, Kawsar Hosan, Md Tanvir Quader, Caroline O. Buckee & Ayesha S. Mahmud
Communications Medicine
January 7, 2025

Tracking COVID-19 Infections Using Survey Data on Rapid At-Home Tests

Mauricio Santillana, Ata A. Uslu, Tamanna Urmi, Alexi Quintana-Mathe, James N. Druckman, Katherine Ognyanova, Matthew Baum, Roy H. Perlis David Lazer
JAMA Network Open
September 30, 2024

Recent publications

Pandemic monitoring with global aircraft-based wastewater surveillance networks

Guillaume St-Onge, Jessica T. Davis, Laurent Hébert-Dufresne, Antoine Allard, Alessandra Urbinati, Samuel V. Scarpino, Matteo Chinazzi & Alessandro Vespignani
Nature Medicine
February 12, 2025

Evaluation of stochastic trajectory-based epidemic models using the energy score

Clara Bay, Kunpeng Mu, Guillaume St-Onge, Matteo Chinazzi, Jessica T. Davis, Alessandro Vespignani
medRxiv
January 14, 2025

Revisiting the Relationship between Weather and Interannual Variation in Human Plague Cases in the Southwestern United States

Karen M. Holcomb, Brad J. Biggerstaff, Michael A. Johansson, Paul S. Mead, Kiersten J. Kugeler, Rebecca J. Eisen
The American Journal of Tropical Medicine and Hygiene
January 14, 2025

Bias in mobility datasets drives divergence in modeled outbreak dynamics

Taylor Chin, Michael A. Johansson, Anir Chowdhury, Shayan Chowdhury, Kawsar Hosan, Md Tanvir Quader, Caroline O. Buckee & Ayesha S. Mahmud
Communications Medicine
January 7, 2025

Real-time estimates of the emergence and dynamics of SARS-CoV-2 variants of concern: A modeling approach

Nicolò Gozzi, Matteo Chinazzi, Jessica T. Davis, Kunpeng Mu, Ana Pastore y Piontti, Marco Ajelli, Alessandro Vespignani, Nicola Perra
Epidemics
December 1, 2024
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Featured news coverage

Featured project

The Global Epidemic and mobility (GLEAM) project has developed new computational techniques and software for the simulation of emerging infectious diseases spreading across the world. The team uses a network approach to map complex human mobility patterns that account for social interaction behaviors, travel patterns (eg, commuting routes), and transportation infrastructures (eg, metro and airline connections). The simulation interface provides a dynamic visualization of spatial contagion across geographical census areas, and quantitatively evaluates the geo-temporal evolution of the disease.

Major funders

NIH/Fred Hutchinson Cancer Research, IARPA, Metabiota, WHO, CDC, ISI Foundation